The option to filter alignments by read group is back in the Alignments tab of the Preferences window. The display mode for an individual track can be changed via its popup menu. ( Git issue #134). It can be set to EXPANDED, SQUISHED, or COLLAPSED. The Alignments tab of the Preferences window has a new option to specify the default display mode for alignment tracks. The length was incorrectly presented as 1bp it is now reported as "undefined". ( Git issue #557). Sorting alignments by start position now uses the first mapped base and ignores any soft-clipped bases. ( Git issue #725).įixed an issue with the read details presented in the popup text for read string = "*". The Copy read sequence command in the track popup menu is now available when viewing alignments as pairs. ( Git issue #580).īLAT searches can now be performed on soft-clipped sequences (if at least 20 bp in length). ( Contributed pull request #728). Note that any values that are set based on experiment type can be overriden in the preferences ( View > Preferences). Values include: 'RNA', '3rd Gen', and 'Other' (the default). ( Git issue #736). The alignment track popup menu now includes a new item where the experiment type can also be set explicitly. This release includes the following new features and improvements:Ī number of default values are set based on the sequencing experiment type, which is inferred from the alignments when they are first loaded from the file, i.e., when the view is sufficiently zoomed in to a region that contains alignments.
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